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| Keywords: Minimum Evolution-Tree-of-C.cinnamoneus.svg Evolutionary relationships of Cortinarius cinnamoneus and relatives The evolutionary history was inferred using the Minimum Evolution method 1 The optimal tree with the sum of branch length 0 16207422 is shown The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test 1000 replicates are shown next to the branches 2 The tree is drawn to scale with branch lengths in the same units as those of the evolutionary distances used to infer the phylogenetic tree The evolutionary distances were computed using the Tamura 3-parameter method 3 and are in the units of the number of base substitutions per site The rate variation among sites was modeled with a gamma distribution shape parameter 5 The ME tree was searched using the Close-Neighbor-Interchange CNI algorithm 4 at a search level of 2 The Neighbor-joining algorithm 5 was used to generate the initial tree The analysis involved 38 nucleotide sequences All positions with less than 95 site coverage were eliminated That is fewer than 5 alignment gaps missing data and ambiguous bases were allowed at any position There were a total of 588 positions in the final dataset Evolutionary analyses were conducted in MEGA6 6 Type-sequences are in bold print Incorrect identifications are marked with ' ' All C cinnamoneus-sequences are reddish brown correct ones are dark reddish gray the incorrect pale reddish gray Sources of used sequences The following sequences are taken from the http //www ncbi nlm nih gov/nuccore/ NCBI Nucleotide-Genbank http //www ncbi nlm nih gov/nuccore/JX045670 C aurantiobasis JX045670 Holotypus http //www ncbi nlm nih gov/nuccore/FJ039589 C cf cinnamomeus FJ039589 http //www ncbi nlm nih gov/nuccore/FJ157025 C cinnamomeus FJ157025 http //www ncbi nlm nih gov/nuccore/FJ717560 C cinnamomeus FJ717560 http //www ncbi nlm nih gov/nuccore/FJ845396 C cinnamomeus FJ845396 http //www ncbi nlm nih gov/nuccore/HQ604650 C cinnamomeus HQ604650 http //www ncbi nlm nih gov/nuccore/AY082608 C cinnamomeus AY082608 http //www ncbi nlm nih gov/nuccore/AY750159 C cinnamomeus AY750159 http //www ncbi nlm nih gov/nuccore/EU525963 C cinnamomeus EU525963 http //www ncbi nlm nih gov/nuccore/JX436890 C cinnamomeusJX436890 http //www ncbi nlm nih gov/nuccore/JN114080 C cinnamomeusJN114080 http //www ncbi nlm nih gov/nuccore/GU234128 C polaris GU234128 http //www ncbi nlm nih gov/nuccore/DQ367899 C semisanguineus DQ367899 http //www ncbi nlm nih gov/nuccore/JN114084 Cortinarius phoeniceus JN114084 1 http //www ncbi nlm nih gov/nuccore/NR_119966 Cortinarius vitiosus NR 119966 1 All other sequences are taken from the https //plutof ut ee/ /datacite/10 15156/BIO/SH222334 07FU Unite/PlutoF Website This are all sequences starting with UDB021 References 1 Rzhetsky A and Nei M 1992 A simple method for estimating and testing minimum evolution trees Molecular Biology and Evolution 9 945-967 2 Felsenstein J 1985 Confidence limits on phylogenies An approach using the bootstrap Evolution 39 783-791 3 Tamura K 1992 Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G + C-content biases Molecular Biology and Evolution 9 678-687 4 Nei M and Kumar S 2000 Molecular Evolution and Phylogenetics Oxford University Press New York 5 Saitou N and Nei M 1987 The neighbor-joining method A new method for reconstructing phylogenetic trees Molecular Biology and Evolution 4 406-425 6 Tamura K Stecher G Peterson D Filipski A and Kumar S 2013 MEGA6 Molecular Evolutionary Genetics Analysis version 6 0 Molecular Biology and Evolution30 2725-2729 own Created with MEGA6 and Inkscape 2016-03-06 Thkgk Cc-zero other versions Cortinarius cinnamomeus Cc-zero | ||||
