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| Keywords: Minimum Evolution.svg Figure Evolutionary relationships of Gloeodontia <br/> The evolutionary history was inferred using the Minimum Evolution method 1 The optimal tree with the sum of branch length 0 48881091 is shown The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test 1000 replicates are shown next to the branches if it is over 50 2 The tree is drawn to scale with branch lengths in the same units as those of the evolutionary distances used to infer the phylogenetic tree The evolutionary distances were computed using the Kimura 2-parameter method 3 and are in the units of the number of base substitutions per site The ME tree was searched using the Close-Neighbor-Interchange CNI algorithm 4 at a search level of 2 The Neighbor-joining algorithm 5 was used to generate the initial tree The analysis involved 20 nucleotide sequences All positions with less than 95 site coverage were eliminated That is fewer than 5 alignment gaps missing data and ambiguous bases were allowed at any position There were a total of 1457 positions in the final dataset Evolutionary analyses were conducted in http //megasoftware net/ MEGA6 6 <br/> 1 Rzhetsky A and Nei M 1992 A simple method for estimating and testing minimum evolution trees Molecular Biology and Evolution 9 945-967 <br/> 2 Felsenstein J 1985 Confidence limits on phylogenies An approach using the bootstrap Evolution 39 783-791 <br/> 3 Kimura M 1980 A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences Journal of Molecular Evolution 16 111-120 <br/> 4 Nei M and Kumar S 2000 Molecular Evolution and Phylogenetics Oxford University Press New York <br/> 5 Saitou N and Nei M 1987 The neighbor-joining method A new method for reconstructing phylogenetic trees Molecular Biology and Evolution 4 406-425 <br/> 6 Tamura K Stecher G Peterson D Filipski A and Kumar S 2013 MEGA6 Molecular Evolutionary Genetics Analysis version 6 0 Molecular Biology and Evolution 30 2725-2729 <br/> ; List with GenBank Sequences which were used for the ML-Tree http //www ncbi nlm nih gov/nuccore/DQ389662 Artomyces pyxidatus DQ389662 http //www ncbi nlm nih gov/nuccore/AF506387 Dentipellis fragilis AF506387 http //www ncbi nlm nih gov/nuccore/AF506430 Echinodontium tinctorium AF506430 http //www ncbi nlm nih gov/nuccore/AY048875 Gloeocystidiellum bisporum AY048875 http //www ncbi nlm nih gov/nuccore/AF441338 Gloeocystidiellum purpureum AF441338 http //www ncbi nlm nih gov/nuccore/AF506444 Gloeodontia columbiensis AF506444 http //www ncbi nlm nih gov/nuccore/AF506445 Gloeodontia discolor AF506445 http //www ncbi nlm nih gov/nuccore/AF506446 Gloeodontia pyramidata AF506446 http //www ncbi nlm nih gov/nuccore/AF506404 Gloeodontia subasperispora AF506404 http //www ncbi nlm nih gov/nuccore/AF506450 Gloiodon nigrescens AF506450 http //www ncbi nlm nih gov/nuccore/AF506449 Gloiodon strigosus AF506449 http //www ncbi nlm nih gov/nuccore/AF506456 Hericium abietis AF506456 http //www ncbi nlm nih gov/nuccore/JN649345 Hericium erinaceum JN649345 http //www ncbi nlm nih gov/nuccore/AF506413 Lactarius volemus AF506413 http //www ncbi nlm nih gov/nuccore/AF506417 Lentinellus cochleatus AF506417 http //www ncbi nlm nih gov/nuccore/AF506419 Lentinellus ursinus AF506419 http //www ncbi nlm nih gov/nuccore/AF506424 Peniophora cinerea subsp fagicola AF506424 http //www ncbi nlm nih gov/nuccore/AF506425 Peniophora incarnata AF506425 http //www ncbi nlm nih gov/nuccore/AF506482 Stereum subtomentosum AF506482 http //www ncbi nlm nih gov/nuccore/AF506491 Xylobolus frustulatus AF506491 own 2014-08-22 Thkgk Cc-zero Gloeodontia Gloeodontia columbiensis Gloeodontia discolor Gloeodontia pyramidata Gloeodontia subasperispora | ||||
