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| Keywords: Boidinia-Minimum Evolution-Tree.svg Figure Evolutionary relationships of Boidinia and Gloeopeniophorella <br/> The evolutionary history was inferred using the Minimum Evolution method 1 The optimal tree with the sum of branch length 0 44296624 is shown The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test 1000 replicates are shown next to the branches 2 The tree is drawn to scale with branch lengths in the same units as those of the evolutionary distances used to infer the phylogenetic tree The evolutionary distances were computed using the Kimura 2-parameter method 3 and are in the units of the number of base substitutions per site The ME tree was searched using the Close-Neighbor-Interchange CNI algorithm 4 at a search level of 2 The Neighbor-joining algorithm 5 was used to generate the initial tree The analysis involved 17 nucleotide sequences All positions with less than 95 site coverage were eliminated That is fewer than 5 alignment gaps missing data and ambiguous bases were allowed at any position There were a total of 1188 positions in the final dataset Evolutionary analyses were conducted in http //megasoftware net/ MEGA6 6<br/> 1 Rzhetsky A and Nei M 1992 A simple method for estimating and testing minimum evolution trees Molecular Biology and Evolution 9 945-967 <br/> 2 Felsenstein J 1985 Confidence limits on phylogenies An approach using the bootstrap Evolution 39 783-791 <br/> 3 Kimura M 1980 A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences Journal of Molecular Evolution 16 111-120 <br/> 4 Nei M and Kumar S 2000 Molecular Evolution and Phylogenetics Oxford University Press New York <br/> 5 Saitou N and Nei M 1987 The neighbor-joining method A new method for reconstructing phylogenetic trees Molecular Biology and Evolution 4 406-425 <br/> 6 Tamura K Stecher G Peterson D Filipski A and Kumar S 2013 MEGA6 Molecular Evolutionary Genetics Analysis version 6 0 Molecular Biology and Evolution30 2725-2729 <br/> ; List with GenBank Sequences http //www ncbi nlm nih gov/nuccore/AY048880 Boidinia_granulata AY048880 http //www ncbi nlm nih gov/nuccore/AF506379 Boidinia_propinqua AF506379 http //www ncbi nlm nih gov/nuccore/AF506413 Lactarius_volemus AF506413 http //www ncbi nlm nih gov/nuccore/AF506378 Boidinia_sp AF506378 http //www ncbi nlm nih gov/nuccore/AF506433 Boidinia_aculeata AF506433 http //www ncbi nlm nih gov/nuccore/AF506435 Gloeopeniophorella_convolvens AF506435 http //www ncbi nlm nih gov/nuccore/AF506440 Gloeopeniophorella_laxa AF506440 http //www ncbi nlm nih gov/nuccore/AF506462 Russula_nauseosa AF506462 http //www ncbi nlm nih gov/nuccore/AF506376 Boidinia_furfuracea AF506376 http //www ncbi nlm nih gov/nuccore/AF506426 Pseudoxenasma_verrucisporum AF506426 http //www ncbi nlm nih gov/nuccore/AF506458 Hericium_americanum AF506458 http //www ncbi nlm nih gov/nuccore/AF506456 Hericium_abietis AF506456 http //www ncbi nlm nih gov/nuccore/AF310099 Gloeocystidiellum_porosum AF310099 http //www ncbi nlm nih gov/nuccore/AF506411 Lactarius_leonis AF506411 http //www ncbi nlm nih gov/nuccore/AF506465 Russula_violacea AF506465 http //www ncbi nlm nih gov/nuccore/AF506412 Lactarius_subemboratus AF506412 own 2014-09-05 Thkgk Cc-zero Gloeopeniophorella Boidinia Russulaceae | ||||
