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| Keywords: Acanthofungus-Maximum Likelihood -Tree.svg Molecular Phylogenetic analysis by Maximum Likelihood method Acanthofungus rimosus and related taxa <br/> The evolutionary history was inferred by using the Maximum Likelihood method based on the Kimura 2-parameter model 1 The tree with the highest log likelihood -2718 2260 is shown The percentage of trees in which the associated taxa clustered together is shown next to the branches Initial tree s for the heuristic search were obtained by applying the Neighbor-Joining method to a matrix of pairwise distances estimated using the Maximum Composite Likelihood MCL approach A discrete Gamma distribution was used to model evolutionary rate differences among sites 5 categories +G parameter 0 5705 The rate variation model allowed for some sites to be evolutionarily invariable +I 60 8784 sites The tree is drawn to scale with branch lengths measured in the number of substitutions per site The analysis involved 20 nucleotide sequences There were a total of 934 positions in the final dataset Evolutionary analyses were conducted in http //megasoftware net/ MEGA6 6 <br/> 1 Kimura M 1980 A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences Journal of Molecular Evolution 16 111-120 <br/> 2 Tamura K Stecher G Peterson D Filipski A and Kumar S 2013 MEGA6 Molecular Evolutionary Genetics Analysis version 6 0 Molecular Biology and Evolution30 2725-2729 <br/> ; List with GenBank Sequences which were used for the ML-Tree http //www ncbi nlm nih gov/nuccore/AY039328 Acanthobasidium norvegicum AY039328 http //www ncbi nlm nih gov/nuccore/AY039333 Acanthofungus rimosus AY039333 http //www ncbi nlm nih gov/nuccore/AY039318 Acanthophysium bisporum AY039318 http //www ncbi nlm nih gov/nuccore/AY039310 Acanthophysium cerussatum AY039310 http //www ncbi nlm nih gov/nuccore/AY039319 Acanthophysium lividocaeruleum AY039319 http //www ncbi nlm nih gov/nuccore/AY039322 Acanthophysium weirii AY039322 http //www ncbi nlm nih gov/nuccore/AY039331 Aleurobotrys botryosus AY039331 http //www ncbi nlm nih gov/nuccore/AY039324 Aleurodiscus abietis AY039324 http //www ncbi nlm nih gov/nuccore/AY039312 Aleurodiscus amorphus AY039312 http //www ncbi nlm nih gov/nuccore/AY039316 Aleurodiscus grantii AY039316 http //www ncbi nlm nih gov/nuccore/AY039332 Aleurodiscus mirabilis AY039332 http //www ncbi nlm nih gov/nuccore/AY039313 Aleurodiscus oakesii AY039313 http //www ncbi nlm nih gov/nuccore/AF287860 Gloeocystidiellum leucoxantha AF287860 http //www ncbi nlm nih gov/nuccore/AF506421 Gloeocystidiellum luridum AF506421 http //www ncbi nlm nih gov/nuccore/AF506424 Peniophora cinerea subsp fagicola strain AF506424 http //www ncbi nlm nih gov/nuccore/AY039330 Stereum hirsutum AY039330 http //www ncbi nlm nih gov/nuccore/AF506480 Stereum reflexulum AF506480 http //www ncbi nlm nih gov/nuccore/AY039311 Stereum rugosum AY039311 http //www ncbi nlm nih gov/nuccore/AF506482 Stereum subtomentosum AF506482 http //www ncbi nlm nih gov/nuccore/AY039307 Xylobolus frustulatus AY039307 own 2014-08-22 Thkgk Cc-zero Acanthofungus Acanthofungus rimosus | ||||
